SE2811050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10055
  • Sorghum bicolor
  • SE2811050
  • Tc1/Mariner
  • St27
  • chromosome_1:19809771-19810039
  • TA
  • TACTCCCTCTGTTCCAAATTATAGTTCACTTTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
      -C  T                           TATACTTTTA        G                    CC      ATAG       C  G      A   CA      TAGTTTCATT    TTT C      TA
TACTCC  TC GTTCCAAATTATAGTTCACTTTAGTTT          TGTCCTAA TTAAACTTTTCTAACTTTGA  AAGTTT    AAAAATA AT AACATT CAA  TCAAGT          AAAT   C ATGAAA  
||||||  || |||||||||||||||||||||||||||          |||||||| ||||||||||||||||||||  ||||||    ||||||| || |||||| |||  ||||||          ||||   | ||||||  T
ATGAGG  AG TAAGGTTTAGTATCAAGTGAGATCGAA          ACAGGATT AGTTTGAAGGGATTGAAACT  TTCAAA    TTTTTAT TA TTGTGG GTT  AGTTCA          TTTA   G TACTTT  
      TA  -                           ----------        A                    TC      ATTA       A  G      A   CA      ----------    CAT A      TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End