Plant MITE

SE2831051

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10056
Sorghum bicolor
SE2831051
hAT
Hat49
chromosome_3:59965465-59966025
TTGGCAAT
TTGGCAATCAGAGGCGTCCCGGA

Secondary structure and sequence

TSD TIR

5'

3'

    G   T   A           -------  CCGTGCGGACTGTGCGACCGAACTGGGCCTATAAAATTTATAGGCCCCAAAATTTACTAAGTTTTCTAAGTATATATAATAATTTTAGGTTTGTTTTAATTAGTAAATTAGTCATAGAGACTCAATAAATATGGCCTGCTACTTTCTTCGAGAGAAAGCACATTAAGTCTATGGTCGTGAATTAGAAAAGTCTATGACCGGTAATTCTTCTTCACATAAGTTTGTAACCCTTCGTGATTTTATGGCTTCGTC
 TTG CAA CAG GGCGTCCCGGA       GC                                                                                                                                                                                                                                                            
 ||| ||| ||| |||||||||||       ||                                                                                                                                                                                                                                                             
 AAC GTT GTC CCGCAGGGTCT       CT                                                                                                                                                                                                                                                            
T   G   -   C           ATTTATA  CTGGGTCAAGTTTTGTTATTCACTTCCGGATTGTAAATAATAGTTTTAGATTTTTTCTATTATAGTTTATAGTTATATGATGTTTCTGTTACATATTTTCTAATTGATTTATTTTATCCCTAACACGTACCTTAAATATGATCCGTTACTAGTGGCAGACCGCAGGATTAGACCCAGGTCGGCAGATCCTAACGATGATCCAGAGCTGAGAATTCGCTGCTTGTTGTGGTTCCCGTTCCTTGTTCAGATTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831051

TTGGCAATCAGAGGCGTCCCGGAGCCCGTGCGGACTGTGCGACCGAACTGGGCCTATAAAATTTATAGGCCCCAAAATTTACTAAGTTTTCTAAGTATATATAATAATTTTAGGTTTGTTTTAATTAGTAAATTAGTCATAGAGACTCAATAAATATGGCCTGCTACTTTCTTCGAGAGAAAGCACATTAAGTCTATGGTCGTGAATTAGAAAAGTCTATGACCGGTAATTCTTCTTCACATAAGTTTGTAACCCTTCGTGATTTTATGGCTTCGTCCCTTAGACTTGTTCCTTGCCCTTGGTGTTGTTCGTCGCTTAAGAGTCGAGACCTAGTAGCAATCCTAGACGGCTGGACCCAGATTAGGACGCCAGACGGTGATCATTGCCTAGTATAAATTCCATGCACAATCCCTATTTTATTTAGTTAATCTTTTATACATTGTCTTTGTAGTATATTGATATTTGATATTATCTTTTTTAGATTTTGATAATAAATGTTAGGCCTTCACTTATTGTTTTGAACTGGGTCTCATATTTATCTGGGACGCCCCTGTTGGCAAT

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