Plant MITE

SE2851053

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10058
Sorghum bicolor
SE2851053
PIF/harbinger
To1
chromosome_9:51628398-51628646
TGA
AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD TIR

5'

3'

TG               CACC      TCCAAA       CAA      CC   A ATCGAATCTTGCGGCACATGCATTAAGCATTAAATATAGACGAAAACAAAAACTAATTACACAGTTTGTCTGTAAA
  AGGCCTTGTTTAGTT    CCGAAA      AAGTTTT   GATTTC  GTC C                                                                            
  |||||||||||||||    ||||||      |||||||   ||||||  ||| |                                                                             
  TCCGGAACAAATCAA    GGCTTT      TTTAAAG   CTAAAG  CGA T                                                                            
AG               ----      ------       --C      --   - GACATCGTGAAAGCAAAAATAAACTGTTTATAACAGGTTAGTACTTGATTGATCCTAGTTTTCTAAGCAGAGCACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851053

TGAGGCCTTGTTTAGTTCACCCCGAAATCCAAAAAGTTTTCAAGATTTCCCGTCACATCGAATCTTGCGGCACATGCATTAAGCATTAAATATAGACGAAAACAAAAACTAATTACACAGTTTGTCTGTAAATCACGAGACGAATCTTTTGATCCTAGTTAGTTCATGATTGGACAATATTTGTCAAATAAAAACGAAAGTGCTACAGTAGCGAAATCCGAAATTTTTTCGGAACTAAACAAGGCCTGA

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