Plant MITE

SE2851057

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10062
Sorghum bicolor
SE2851057
PIF/harbinger
To1
chromosome_5:11255230-11255467
TTA
AGGCCTTGTTCAGTTGGCAAATTGTTTGGATTT

Secondary structure and sequence

TSD TIR

5'

3'

TT          C     G    TT    --          T    TA   - TTTCG      T TGGTAACTATTGTCCAATCATGGACTAACTAGGCTTAAAAGATTTGTCTCGCCAATTAT
  AGGCCTTGTT AGTTG CAAA  GTTT  GGATTTTGGG ACTG  GCA C     TTTGTA T                                                           
  |||||||||| ||||| ||||  ||||  |||||||||| ||||  ||| |     |||||| |                                                            
  TCCGGAACAA TCAAC GTTT  CAAA  TCTAAGAGGC AGTA  TAG T     TAGAAT G                                                           
AT          A     G    TT    AT          -    --   C -----      - CCATGTACGTACCTCATAATTTATATCTGCTTTTATTTTTGATTAATGTGTCAAATGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851057

TTAGGCCTTGTTCAGTTGGCAAATTGTTTGGATTTTGGGTACTGTAGCACTTTCGTTTGTATTTGGTAACTATTGTCCAATCATGGACTAACTAGGCTTAAAAGATTTGTCTCGCCAATTATAGGTAAACTGTGTAATTAGTTTTTATTTTCGTCTATATTTAATACTCCATGCATGTACCGTAAGATTCGATATGACGGAGAATCTTAAAACTTTTTGGCAACTAAACAAGGCCTTA

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