Plant MITE

SE2831058

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10063
Sorghum bicolor
SE2831058
hAT
Hat69
chromosome_4:50675600-50675771
CAAGGGAG
GCAGGGGCGAAGCTACGGCTTGCCATTGGGGTCTGCTGA

Secondary structure and sequence

TSD TIR

5'

3'

CAAGGGA    G          C    ----T             --     CCC  ATGAATTTTGAAAAACAAAGAGAGAATCAATCT
       GCAG GGCGAAGCTA GGCT     GCCATTGGGGTCT  GCTGA   CG                                 
       |||| |||||||||| ||||     |||||||||||||  |||||   ||                                 A
       CGTC CCGCTTCGGT CCGA     TGGTAGCCCCAGA  CGACT   CG                                 
GAGGGAA    A          -    TCTTC             AC     --T  TTCCGCCCCAGTATTCTCGTTTATTGTTAGTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831058

CAAGGGAGCAGGGGCGAAGCTACGGCTTGCCATTGGGGTCTGCTGACCCCGATGAATTTTGAAAAACAAAGAGAGAATCAATCTACATGATTGTTATTTGCTCTTATGACCCCGCCTTGCTTCAGCCAAGACCCCGATGGTCTTCTAGCCTGGCTTCGCCACTGCAAGGGAG

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