Plant MITE

SE2851061

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10066
Sorghum bicolor
SE2851061
PIF/harbinger
To2
chromosome_10:1303095-1303340
TTA
AGGCCTTGTTTAGTTTCA

Secondary structure and sequence

TSD TIR

5'

3'

TT            G     ----AA     T     AATT -  -   -   -  TCACATCGAATCTTGCTACACATACATGGAGTATTAAATATAGATAAAAAGAAATAACTAATTGCACAGTTTA
  AGGCCTTGTTTA TTTCA      AAACT TGCAA    T TT CAG ATT TG                                                                         
  |||||||||||| |||||      ||||| |||||    | || ||| ||| ||                                                                         C
  TCTGGAACAAAT AAGGT      AAACG TTTTA    C TG AAC TCG GA                                                                         
AT            G     AAAAAA     -     ---- C  T   A   T  AAGCAAACATAAACTGTTTATAACAGGTTAATACCTGATTAATCCGAGTTTTCTAAGTAGAGCGTTTAATGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851061

TTAGGCCTTGTTTAGTTTCAAAAAACTTTGCAAAATTTTTCAGATTTGTCACATCGAATCTTGCTACACATACATGGAGTATTAAATATAGATAAAAAGAAATAACTAATTGCACAGTTTACCTGTAATTTGCGAGATGAATCTTTTGAGCCTAATTAGTCCATAATTGGACAATATTTGTCAAATACAAACGAAAGTGCTACAATGTCCATTTTGCAAAAAAAAATGGAAGTAAACAAGGTCTTA

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