SE2851065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10070
  • Sorghum bicolor
  • SE2851065
  • PIF/harbinger
  • To1
  • chromosome_6:624145-624640
  • CAA
  • GGCCTTGTTTAGTTCACCCTGAAAACCAAAAAGTTTTCAAGATTCTCCGTCACATCGAATCTTTTGACACATGCATG

Secondary structure and sequence

TSD    TIR
5'



3'
  CAA           G   AC          A    G                               T   AC       AAAC            C         A                -   T T     -                  T        T     AA          T                    T    C   -------------------------A      TCCAAAATCTTTTCGCATC
     GGCCTTGTTTA TTC  CCTGAAAACC AAAA TTTTCAAGATTCTCCGTCACATCGAATCTTT GAC  ATGCATG    ATTAAATATAGA GAAAATAAA ACTAATTGCACAGTTT ATC G AAATT ACGAGACGAATCTTTTGA CCTAGTTA TTCAT  TTGGACAATA TTGTCACAAACAAACGAAAG GCTA AGT                          GCGAAA                   
     ||||||||||| |||  |||||||||| |||| ||||||||||||||||||||||||||||||| |||  |||||||    |||||||||||| ||||||||| |||||||||||||||| ||| | ||||| |||||||||||||||||| |||||||| |||||  |||||||||| |||||||||||||||||||| |||| |||                          ||||||                    
     CCGGAACAAAT AAG  GGGTTTTTGG TTTT AAAAGTTCTAAGAGGCAGTGTAGCTTAGAAA CTG  TACGTAC    TAATTTATATCT TTTTTATTT TGATTAATGTGTCAAA TAG C TTTAA TGTTCTGCTTAGAAAACT GGATCAAT AAGTA  AACCTGTTAT AATGGTGTTTGTTTGCTTTT CGAT TCA                          ATTTGT                   
CTAAC           G   GA          A    A                               T   CA       CTCA            A         C                C   - -     C                  C        C     CG          T                    T    A   CATTACTTTACAAAACCAACTCCTTC      GCCGGAACCCGGAACAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End