Plant MITE

SE2851066

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10071
Sorghum bicolor
SE2851066
PIF/harbinger
To2
chromosome_9:50315854-50316340
TTA
AGGCCT

Secondary structure and sequence

TSD TIR

5'

3'

TT      --------    CCTTATTTTTCCAAAAAAAAATTGTAAAAATTTTCAGATTCTCCGTCACATCGAATCTTTAGACGTTTGTATGGAGTATTAAATATAGACAAAAATAAAAACTAATTACACAGTTTGGTCGAAATTGACGAGACGAATATTTTGAGTCTAGTTAGTCTATGATTAGACAATATTTGTCAAATACAAACGAAATTGTTACTATTCACATTTTGCAAAATATTTTGCAA
  AGGCCT        TGGA                                                                                                                                                                                                                                   
  ||||||        ||||                                                                                                                                                                                                                                   G
  TCCGGA        AGCG                                                                                                                                                                                                                                   
AT      ATAAATCA    TTTTTAAAAGTTCTAAGGGGCAGTGTAGCTTAGAAACCAGCGTACGTATCTCGTAATTTATGTCTGCTTTTATTTTTGATTGACGTGTCAAATGGACATTAAACACTCTACTTAGAAAACTCGGATCAATGAAGCACTAACCTGTTACAAACAGTTTATTTTTGCTTTACGATGTCATCGGTTTTTGTTTTTAAAAACGCTTGATTTGTTCCGGATTTGTTCCAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851066

TTAGGCCTTGGACCTTATTTTTCCAAAAAAAAATTGTAAAAATTTTCAGATTCTCCGTCACATCGAATCTTTAGACGTTTGTATGGAGTATTAAATATAGACAAAAATAAAAACTAATTACACAGTTTGGTCGAAATTGACGAGACGAATATTTTGAGTCTAGTTAGTCTATGATTAGACAATATTTGTCAAATACAAACGAAATTGTTACTATTCACATTTTGCAAAATATTTTGCAAGTAAACCTTGTTTAGGCCTTGTTTAGTTCGCAAAAATTTTTGTTTTTGGCTACTGTAGCATTTCGTTTTTATTTGACAAACATTGTCCAATCACGAAGTAACTAGGCTCAAAAGATTCATCTCACAAATTACAGGTAAACTGTGCAGTTAGTTTTTATTTTCGTCTGTATTTAATGCTCTATGCATGCGACCAAAGATTCGATGTGACGGGGAATCTTGAAAATTTTTGCGAACTAAATAAGGCCTTA

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