SE2851068

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10073
  • Sorghum bicolor
  • SE2851068
  • PIF/harbinger
  • To14
  • chromosome_8:1619983-1620229
  • TAA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                AAAAAAA    -      TTTTC      CTAATCACATCGAATCTTGCGGTACATACATGAAGTATTAAATATAGATAAAATAAATAACTAATTACACAGTTTGCCT
  AGGCCTTGTTTAGTTC       TTTG CAAAAT     AGATTT                                                                               
  ||||||||||||||||       |||| ||||||     ||||||                                                                                
  TCCGGAACAAATCAAG       AAAC GTTTTA     CCGTGA                                                                               
AA                ATAAAAA    T      ----C      CATCGTGAAAATAAACATAAACTGTTTATAATAGATTAATACCTGATTGATCCGAATTTTCTAAGCAGAGTGTTTAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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