SE2811074

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10079
  • Sorghum bicolor
  • SE2811074
  • Tc1/Mariner
  • St3
  • chromosome_8:1947306-1947820
  • TA
  • TACTCCCTCCATACCTAAATTAATTGACGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                 A    A       CCTA   TGAA     -     CGCAAAAACTGTCGTCGTACGTCCGCTGTTATTTTTAGGACGCGATTGCCCTTGCCCACCTGTAGCGCTCGCCAACTCCTCGTTTCGCTCGCAATTAATCGCTCGCGTCAAAGTAGTCCATGCATCAGACCTTTGAAATCCTGCGCCACCGTAAAAAAAAACTAGCCCCGTAAAAAAACTAGCCCAAAACGCGCGCCACACCCAGACCCA
TACTCCCTCCATACCTA ATTA TTGACGT    GGC    GATGC GTTTT                                                                                                                                                                                                                  
||||||||||||||||| |||| |||||||    |||    ||||| |||||                                                                                                                                                                                                                   
ATGAGGGAGGTATGGGT TAAT AACTGCA    AAT    CCTGT CTAAC                                                                                                                                                                                                                  
                 C    C       ----   ----     A     ACGAATGGTTCCTCAGTAATTAATCCTACATAAAAAGGGACAGATGGGGATAATTTATACTTTAGCCCACGTAAAATATACTCTTTTGATGAATTGAGTATACCAATCATGTCACTCCACAATCAGTCCGGTCGACACAAGCTTAGGAACACCGGTGTATAAAACGTCCAAAACCAAAACAACCGTAACAAACGGACGTACGCAATGCCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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