SE2851077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10082
  • Sorghum bicolor
  • SE2851077
  • PIF/harbinger
  • To4
  • chromosome_10:45449736-45449972
  • TTA
  • AGGCCTTGTTTAGTTCGTAAAATTTTTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                      T      ----         ACT  AGC    CGTTTTTATTTGATAAACATTGTCCAATCACGGAGTAACTAGGCTCAAAAGATTCATCTCACAAATT
  AGGCCTTGTTTAGTTCGTAAAA TTTTCG    TTTTTGGGT   GT   ATTT                                                                   
  |||||||||||||||||||||| ||||||    |||||||||   ||   ||||                                                                   A
  TCCGGAACAAATCAAGCGTTTT AAAAGT    AAGGGCAGT   GT   AGCT                                                                   
AT                      T      TCTA         ---  ---    TAGAAACCAGCGTACGTACCTCGTAATTTATATCTGCTTTTATTTTTGATTAACGTGTCAAATGGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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