Plant MITE

SE2831079

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10084
Sorghum bicolor
SE2831079
hAT
Hat2
chromosome_3:3155967-3156141
CTGAGTGA
CTGAGTGATAAGGATGGAGATAGCTCTCCAAATGAATACTCACGTTCTTTTTTAGTGTA

Secondary structure and sequence

TSD TIR

5'

3'

     G    ATA       A     CT  CC     AA     -AC             G  CCTA   A         AAAAAAGAGAA
   CT AGTG   AGGATGG GATAG  CT  AAATG  TACTC   GTTCTTTTTTAGT TA    AAT AATTAAATA           
   || ||||   ||||||| |||||  ||  |||||  |||||   ||||||||||||| ||    ||| |||||||||            
   GA TCAT   TCTTACC CTGTC  GA  TTTAC  ATGAG   CAAGAAGAGATCA AT    TTA TTGATTTAT           
AGT  G    ---       C     AC  AA     CC     CTC             G  TAAA   C         CTATTAAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831079

CTGAGTGATAAGGATGGAGATAGCTCTCCAAATGAATACTCACGTTCTTTTTTAGTGTACCTAAATAAATTAAATAAAAAAAGAGAAAAAAAATTATCTATTTAGTTCATTAAATTAGACTAGAGAAGAACCTCGAGTACCCATTTAAAGCACTGTCCCCATTCTTACTGAGTGA

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