Plant MITE

SE2851081

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10086
Sorghum bicolor
SE2851081
PIF/harbinger
To1
chromosome_2:76078805-76079287
TTA
AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD TIR

5'

3'

TT            G   ---     AAATTTCGAATTTCGCTACTGTAGCACTTTCGTTTTTATTTGACAAATATTGTTCAATCATAAACTAACTAGGATCAAAAGATTCGTCTCGCGATTTACAGACAAACTGTGTAATTAGTTTTTATTTTCGTCTATATTTAATTCTTCATGCATGTGCCACAAGATTCGATGTGACGGGGAATCTTGAAAACTTTTTGGATTTTGGAGTGAACTAAGG
  AGGCCTTGTTTA TTC   CGAAA                                                                                                                                                                                                                         
  |||||||||||| |||   |||||                                                                                                                                                                                                                          
  TCCGGAACAAAT AAG   TAAAA                                                                                                                                                                                                                         
AT            G   ATT     AAACGTTTTACACTTATCATCGTGAAAGCAAACATAAACTGTTTATAACAGATTAATATCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAAGCTGGTTTGACACATTAATCAAAAATAAAAGTAGATATAAATTATAAGGTATGTATGCAGATTTCTAAGCTACACTGCCCTTAGACTTTTCAAAACGTTTTAAAAACCCCTTGATTTGTTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851081

TTAGGCCTTGTTTAGTTCCGAAAAAATTTCGAATTTCGCTACTGTAGCACTTTCGTTTTTATTTGACAAATATTGTTCAATCATAAACTAACTAGGATCAAAAGATTCGTCTCGCGATTTACAGACAAACTGTGTAATTAGTTTTTATTTTCGTCTATATTTAATTCTTCATGCATGTGCCACAAGATTCGATGTGACGGGGAATCTTGAAAACTTTTTGGATTTTGGAGTGAACTAAGGCCTTGTTTAGTTCCCCAAAAATTTTGCAAAACTTTTCAGATTCCCGTCACATCGAATCTTTAGACGTATGTATGGAATATTAAATATAGATGAAAATAAAAACTAATTACACAGTTTGGTCGAAATTGACGAGACGAATCTTTTGAGCCTAGTTAGTCTATAATTAGACAATATTTGTCAAATACAAACGAAAGTGCTACTATTCACATTTTGCAAAAAAATTTAGAAGTAAACAAGGCCTTA

Copy Cancel