SE2851085

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10090
  • Sorghum bicolor
  • SE2851085
  • PIF/harbinger
  • To14
  • chromosome_4:57906787-57907058
  • TAA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -----CCAA        CCTTGTTTAGTTTTCAAAAAAATTGTAAAATTTTCAGATTTCTCGTCATATCGAATCTTGCGGAACATGTATGGAGCTCTAAATATAGATAAAAGAAATAATT
  AGGCCTTGTTTAGTTC         AAAATTAG                                                                                                       
  ||||||||||||||||         ||||||||                                                                                                       A
  TCCGGAACAAATCAAG         AACGTTTT                                                                                                       
AA                ATAAAAAAA        ACCTATGACATCGTGCAAGTAAACATAAATTGTTTATAACAGGTTAATACCTGATTGATCCGAGTTTTCTAAGCAGAGAGTTTAATGTCCATTTGACACATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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