SE2851087

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10092
  • Sorghum bicolor
  • SE2851087
  • PIF/harbinger
  • To1
  • chromosome_3:6671658-6671906
  • TTA
  • AGGGCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G           ACACCCAAAAACCCAAAACTTTA   -    TCC ----------- TCACATCGAATCTTGCGGCACATGCATGAAGTATTAAATATAGATAAAAAGAATAACTAATTACACAGTTTATCTGTAA
  AGG CTTGTTTAGAT                       CAA GATT   C           G                                                                               
  ||| |||||||||||                       ||| ||||   |           |                                                                               A
  TCC GAACAAATCTA                       CGT TTTC   A           T                                                                               
AT   G           -----------------------   T    --- AAAATCTAAAA TGTGACATCATAAAAGCAAAAATAAACTGTTTGTAACAGATTAATACCTCATTGATCCGAATTTTCTAAGCAGAGCACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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