SE2851089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10094
  • Sorghum bicolor
  • SE2851089
  • PIF/harbinger
  • To2
  • chromosome_5:46395166-46395414
  • TAA
  • AGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     ----         TT   --------------- A    - AATTTTCGCGACACTGTAGCACTTTCGTTTGTTTGTGGTAATTATTGTCCAACCATAGACTAACTAGGCTCAAAAGATTCGTCTCATC
  AGGCC    GTGTTTAGT  GTC               G CGAA A                                                                                        
  |||||    |||||||||  |||               | |||| |                                                                                         
  TCCGG    AATGAAGGT  GGG               A AGTT T                                                                                        
AA     AACA         --   GTTTTGGGTTTTAAA -    C AAGGGGCAGTGTAGCTTAGAAATTTGTATACGTACCTTATAATTTATATCTACTTTTATTTTTGATTAATGTGTCAAACCAGCTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3