SE2831091

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10096
  • Sorghum bicolor
  • SE2831091
  • hAT
  • Hat71
  • chromosome_2:8192563-8192839
  • GATACAGA
  • GTGGCGGAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
GATACAGACA           AACAAGTTTGATTAA      CCGACAAACTGTATTTTTT          ATATATATATAATTATATGTTTGAAGAACTTTTTAAAAAATATTACACTATTTCTTATCAAAATCGTTATATTTGAACAAAAAA
          GTGGCGGAACT               AGGGGG                   TAGTGTGATA                                                                                    
          |||||||||||               ||||||                   ||||||||||                                                                                     
          TACCGCCTTGA               TCCCCC                   GATCGTCCCC                                                                                    
AGACATAGGA           ---------------      ------------------C          ATCACGAGGGGGATTCGGTCAGTAAGGAAATTTATGGATACATTTATAATTATAAATATCATATTCTTTATAATTAAAATGGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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