Plant MITE

SE2851096

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10101
Sorghum bicolor
SE2851096
PIF/harbinger
To38
chromosome_7:57502800-57503085
TTA
AGGCCAGTCTCAGTGGAGAGTTTCA

Secondary structure and sequence

TSD TIR

5'

3'

TT      G         A        --T  C   GTT      ACTGC   G    GTGAAATGAAATGAAACTTGGATGAAACACCCACTCTCAATGGAGAGTTTCATTTCATAGTTTCATAGGCATTTAATTCCAAGACTCATAG
  AGGCCA TCTCAGTGG GAGTTTCA   GG GTT   TCCAAG     CAT TCAT                                                                                           
  |||||| ||||||||| ||||||||   || |||   ||||||     ||| ||||                                                                                            
  TCCGGT AGAGTTACC CTCAAAGT   CT CAA   AGTAAA     GTA ATTT                                                                                           
AT      A         -        TCA  -   ---      ----C   -    ATCCAACGGTGTATCCGAAAAAACTACTGTACCGTCACATAAATTCTTCTCTCTCTTCTTTACTCAAAGTGAACCGTGCTAATGGTTGAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851096

TTAGGCCAGTCTCAGTGGAGAGTTTCATGGCGTTGTTTCCAAGACTGCCATGTCATGTGAAATGAAATGAAACTTGGATGAAACACCCACTCTCAATGGAGAGTTTCATTTCATAGTTTCATAGGCATTTAATTCCAAGACTCATAGAGAGTTGGTAATCGTGCCAAGTGAAACTCATTTCTTCTCTCTCTTCTTAAATACACTGCCATGTCATCAAAAAAGCCTATGTGGCAACCTATTTAATGCAAATGAAACTCACTTGAAACTCCCATTGAGAATGGCCTTA

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