SE2851097

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10102
  • Sorghum bicolor
  • SE2851097
  • PIF/harbinger
  • To1
  • chromosome_4:59873434-59873682
  • TAA
  • AGGCCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               GCAC        -CCAAAACTTTA     ----   CCCATCACATCGAATCTTGCGGCACATGCATAGAACATTAAATATAGATAAAAAAGATAACTAATTGCACAGTTTA
  AGGCCTTGTTTAGAT    CCAAAAAC            CAAGA    TTC                                                                            
  |||||||||||||||    ||||||||            |||||    |||                                                                             
  TCCGGAACAAATCTA    GGTTTTTG            CTGTG    CGT                                                                            
AA               ----        AAAAACCTAAAA     ACAT   GAAAGCAAAAATAAACTGTTTGTAATAGGTTAGTACCTCATTGATCCGAATTTTCTAAGCAGAGCACTAAATGTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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