SE2851100

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10105
  • Sorghum bicolor
  • SE2851100
  • PIF/harbinger
  • To2
  • chromosome_3:62526664-62527140
  • CCC
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
CCCTCCCCAATATCCC    TAAAGCTCGTCTGAATGTACCGTATGGTCTTGTTTACTTCTACCCTAAAATCTAAAATTTTTCAAGATTTCTCATCACATCAAATCTTTAGACACATGCATAAAGTATTAAATATAGACGGAAATAAAAACTAATTATACAGTTTGGTCGAAATTTACGAGACGAATCTTTTGAGCCCAGTTAGTCTATGATTGGACAATATTTGTCACATACAAACGAAAGAGATACTGTAGCAATTTTGCAAAA
                AGCT                                                                                                                                                                                                                                                      
                ||||                                                                                                                                                                                                                                                       
                CCGG                                                                                                                                                                                                                                                      
             TAT    AACAAATCCAGGATTTTTTTAAACGTTTTAAAAAGTCTAAGGGGCAGTGTAGCTTAGAAATCTGTGTACATACTTCATAATTTATATCTGTTTTTATTTTTGATTAATGTGTCAAACCAGCTTTAACTGCTCTGCTTAGAAAACTCGGATCAATCAGGTATTAACCTGTTATAAACAGTTTATGTTTGCTTTTTCGATGTCACAGTTAAAACGTTTTATAAAACCTTGATTTGTTGAAAGGTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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