SE2851106

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10111
  • Sorghum bicolor
  • SE2851106
  • PIF/harbinger
  • To1
  • chromosome_9:9593074-9593324
  • TAA
  • AGGCCTTGTTTAGTTCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             -     CCTAAAAATC   T       --------------       TCCGTCACATCGAATCTTGCGGCACATGTATGGAGCATTAAATATAGATGAAAACAAAAACTAATTGCACAGTTT
  AGGCCTTGTTTAG TTCAC          AAA ACTTTTT              AAGATTC                                                                           
  ||||||||||||| |||||          ||| |||||||              |||||||                                                                            
  TCCGGAACAAATC AGGTG          TTT TGAAAAA              ATCGTGA                                                                           
AA             T     ----------   T       CCTAAAACTATGAC       AAGTAAAAATAAACTGTTTGTAACAGGTTAGTACTTCATTGATCCGAATTTTCTAAGCAAAGCGCTAAATATCCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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