SE2851117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10122
  • Sorghum bicolor
  • SE2851117
  • PIF/harbinger
  • To1
  • chromosome_6:49898188-49898428
  • TTA
  • AGGCCTTGTTTAGATGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 AAAAAGTTTTA    -----   GACAC G   CAT      TT  - TTT     ACATTGTCTAATTATGGAGTAACTAGGCTTAAAAGATTCATCTCGTGATTTACAAGTAAAC
  AGGCCTTGTTTAGATGC           GAAT     TTT     T TAG   TTTCGT  TT A   GACAA                                                             
  |||||||||||||||||           ||||     |||     | |||   ||||||  || |   |||||                                                              
  TCCGGAACAAATCTATG           TGGA     AAA     T GTT   CTAAGG  GG A   GTGTA                                                             
AT                 -----------    TTTTG   ----- -   ---      --  C ---     GCTTAGAATGCCGTGTACGTACTTCATAATTTATATTTATTTTTCTTATTGATTAATGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3