SE2811118

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10123
  • Sorghum bicolor
  • SE2811118
  • Tc1/Mariner
  • St7
  • chromosome_4:54069566-54069828
  • TA
  • TACTCCCTCCATACCTGTAAAGAAAGTCATTTAGGACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
         C                  A   A      --------C    C -------- TCTC -    CCTAACTTTGACTCCTTGTTTTTATAAAAATATTTATCAAAAAATGGTATATGTATATTTTTATGAAAT
TACTCCCTC ATACCTGTAAAGAAAGTC TTT GGACAA         GACA G        G    C AAAG                                                                     
||||||||| |||||||||||||||||| ||| ||||||         |||| |        |    | ||||                                                                     T
ATGAGGGAG TATGGATATTTCTTTCAG AAA CCTGTT         GTTT G        A    T TTTA                                                                     
         A                  C   A      CCAAACCCA    - TAACCCTT ---- A    GTACTTATTGAAAATTCAACAACTCAAACCTTTACACTTTTGGTATACTTAACTAAACAGAACTTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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