SE2851119

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10124
  • Sorghum bicolor
  • SE2851119
  • PIF/harbinger
  • To2
  • chromosome_3:5270409-5270657
  • TAA
  • AGGCCTTGTTTAGTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            G    TGA     - ACATTTCGTGACACTGTAGCACTTTCGTTTGTTTGTGGTAATTATTGTTCAACTATGGACTAACTAGGCTCAAAAGATTCGTCTTGTCAATTTCGA
  AGGCCTTGTTTA TTCC   ACGAA A                                                                                                
  |||||||||||| ||||   ||||| |                                                                                                C
  TCCGGAACAAAT AAGG   GGTTT T                                                                                                
AA            G    -TG     T ACGTTTTAAAAAGTTCTAAGAGGCAGTGTAGCTTAGAAATCTGCGTACGTACCTCATAATTTATATCTGCTTTTATTTTTGATTAACGTGTCAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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