SE2831121

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10126
  • Sorghum bicolor
  • SE2831121
  • hAT
  • Hat75
  • chromosome_3:64751494-64752033
  • CAACCAAC
  • TCAAGATGGCAATGGGGACCCG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAACCAACC                  ----    AAA    A   TCCGCGGGGAATTCCTCTACTGGGGATCGGGGATGGGAGAGATTTACTCCCCACGGGGAGACTAATGGGGAAAATTCCCTCCCCATCGGGTCTGGCGGGTTCGGGGATGTTCCCTATGTCCCCGTACCCGAAACCCGCGTACCCGTCCCGTTAATTAATAAATACAAATATATAGAATATGGATGCAGAGGGACTATGATTGAGAAACTAAGAATGTGACTAGTTGTA
         TCAAGATGGCAATGGGGA    CCCG   CCCG TTT                                                                                                                                                                                                                                    
         ||||||||||||||||||    ||||   |||| |||                                                                                                                                                                                                                                     
         AGTTCTACCGTTACCCCT    GGGC   GCCC TTA                                                                                                                                                                                                                                    
 CAACCAAC                  TAAG    --A    -   ACTGGGTGGTAGGGGCAGGGGCACCCCCCTTTTAAAGGGGCAGGGGCAGGGGCGGTTCCGGTAACCCTTTGTAAAAAGAGGGTAGGGGCAAGGGGCGCCTCTTAACCAGGGGCTACCCCTAGGGGCATGGGCTGTGATTTGTTCTATTTCCGTTATCTTGTTATTCGTACTGATTCTGTGCTAATAGTTAACACTAGATTTCAAGTATGTGTGTAGTATTAGTATCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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