SE2851122

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10127
  • Sorghum bicolor
  • SE2851122
  • PIF/harbinger
  • To2
  • chromosome_4:10280223-10280469
  • ATA
  • GGCCTTGTTTAGTTCCAAAATATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA               C    TAT          CGACAC  T     TTTC      --   T --------  -  ATATTGTCCAATCATAGACTAACTAGGCTCAAAAGATTCATCTCGTCAATTTC
   GGCCTTGTTTAGTTC AAAA   TTTGCAAAAT      TG AGCTT    GTTTGT  ATT G        AC AA                                                     
   ||||||||||||||| ||||   ||||||||||      || |||||    ||||||  ||| |        || ||                                                      
   CCGGAACAAATCAAG TTTT   AAACGTTTTA      TC TAAGG    GGCAGT  AGC T        TG GT                                                     
ATA               -    TTT          -AAAAG  -     ----      GT   - TAGAAATC  T  ACGTACTTCATAATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAACCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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