SE2851124

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10129
  • Sorghum bicolor
  • SE2851124
  • PIF/harbinger
  • To1
  • chromosome_4:2974216-2974802
  • TTA
  • TAGGGCCTGTTTAGATTG

Secondary structure and sequence

TSD    TIR
5'



3'
T        -      A   GGAA           T   ------             G GTC  AA G    -C   -----------   GATTTT           AAAA    A ATTACATAGCTCGTCAGGAAACTGCAAGACAAATTTATTAAGCATAATTAATCTGTCATTAGCATATGTGGGTTACTGTAGCACTTACGGCTAATCATGGAGTAACTAGGCTTAAAAGATTCGTCTCGCGATTCTCAACTAAACTGTGTAATTAGTTTATTTTTTTATCTACATTTAATGTTTCATGCA
 TAGGGCCT GTTTAG TTG    CGGAAATTTTT GAG      TGTCACATCGGAT T   GG  G ATGT  GGA           AGA      TAGAAACTAAT    AAAC A                                                                                                                                                                                             
 |||||||| |||||| |||    ||||||||||| |||      ||||||||||||| |   ||  | ||||  |||           |||      |||||||||||    |||| |                                                                                                                                                                                              
 ATTCCGGA CAAATC AGC    GTTTTTAAAAG TTC      GCAGTGTAGCTTA A   CC  C TACG  CCT           TCT      ATTTTTGATTA    GTGT C                                                                                                                                                                                             
         A      A   ----           -   TAAAGG             G -AA  AG G    TA   CGTAATTTATA   ATTTTT           --AT    - AAATAGACATTAAACACTCTCCTTAGAAAACTCGGATTAATGAGGTACTAACCTGTTACAAACAGTTTATTTTTGCTTTCACGATGTCATCGGTTTTTGGTTTCAAAAACGGTTGACTTGTTCCGGATTCCGGGACAAATCAAAGGGTGGATTTTTAAAAAGTAGGTAGGGTAGCTTAGAAACCTGTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End