SE2851127

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10132
  • Sorghum bicolor
  • SE2851127
  • PIF/harbinger
  • To14
  • chromosome_3:7587708-7587952
  • TAA
  • AGGCCTTGTTTAGTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C             AAATTTTTTG       ACACAC      ACTTTCGTTTGTATTTGACAAATATTGTCCAATCATGGATTAACTAGGCTCAAAAGATTCGTCTCGCAAATTACA
  AGG CTTGTTTAGTTCC          GCAAAAT      TGTGGC                                                                           
  ||| |||||||||||||          |||||||      ||||||                                                                            
  TCC GAACAAATCAAGG          CGTTTTA      TCTAAG                                                                           
AA   T             GTTTTTTAAA       -AAAAG      AGGCAGTGTAGCTTAGAACGCCGTGTACGTAACTCGTAATTTATATCTATTTTTATTAATTAATGTATTCAACAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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