Plant MITE

SE2851129

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10134
Sorghum bicolor
SE2851129
PIF/harbinger
To1
chromosome_2:64950636-64950873
TAA
AGGCCTTGTTTAGTTCCCAAAATTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TA               -CCC         C       CC  -  -----A  TCGAATCTTGCGGCACATGCATGAAGCATTAAATATGGACGAAAACAAAAACTAATTACGCAGTTTACCTG
  AGGCCTTGTTTAGTT    AAAATTTTT AAGATTC  CG TC      CA                                                                       
  |||||||||||||||    ||||||||| |||||||  || ||      ||                                                                        
  TCCGGAACAAATCAA    TTTTAAAAA CCTAAAG  CG TG      TG                                                                       
AA               ACTC         -       --  A  ACATCG  AAAGCAAACAAACACCGTTTATAATAGGTTAGTATCTGATTGATCCTAGTTTTCTAAGCAGGGCACTAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851129

TAAGGCCTTGTTTAGTTCCCAAAATTTTTCAAGATTCCCCGTCACATCGAATCTTGCGGCACATGCATGAAGCATTAAATATGGACGAAAACAAAAACTAATTACGCAGTTTACCTGTAAATCACGGGACGAATCTTTTGATCCTAGTTAGTCTATGATTGGATAATATTTGCCACAAACAAACGAAAGTGCTACAGTAGCGAAATCCAAAAATTTTCTCAAACTAAACAAGGCCTAA

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