Plant MITE

SE2851132

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10137
Sorghum bicolor
SE2851132
PIF/harbinger
To4
chromosome_10:52105836-52106073
TTA
AGGCCTTGTTTAGTTGGCAAAAATTTTTA

Secondary structure and sequence

TSD TIR

5'

3'

TT               G             TT      AACT  A  A -   CGTTTTTATTTGACAAACATTGTCCAAACAAAGAGTAACTAGGCTCAAAAGATTCATCTCATAAATT
  AGGCCTTGTTTAGTT GCAAAAATTTTTA  TTTGGC    GT GC C TTT                                                                   
  ||||||||||||||| |||||||||||||  ||||||    || || | |||                                                                   A
  TCCGGAACAAATCAA CGTTTTTAAAAGT  TCTAAG    AG TG T GCT                                                                   
AT               G             --      GAAT  -  - A   TAGAAACCAGCGTACGTACCTCGTAATTTATATCTACTTTTATTTTTGATTAACGTGTCAAATGGAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851132

TTAGGCCTTGTTTAGTTGGCAAAAATTTTTATTTTTGGCAACTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAAACAAAGAGTAACTAGGCTCAAAAGATTCATCTCATAAATTACAGGTAAACTGTGCAATTAGTTTTTATTTTCATCTATATTTAATGCTCCATGCATGCGACCAAAGATTCGATGTGATAAGGAATCTTGAAAATTTTTGCGAACTAAACAAGGCCTTA

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