SE2831133

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10138
  • Sorghum bicolor
  • SE2831133
  • hAT
  • Hat1
  • chromosome_4:61860781-61860961
  • GAGGCAAG
  • GCAAGCAGGGGCGGAGCTGCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAG  A G   G          -C  --------------   TC  ---  GGGGTGCAAATGCACCCACCAAAAATTCAAAAAGAATAGATTTGGTTA
   GC A CAG GGCGGAGCTG  GT              TGC  AT   AT                                                
   || | ||| ||||||||||  ||              |||  ||   ||                                                A
   CG T GTC CCGCTTCGAT  CA              ACG  TG   GG                                                
GAA  G G   A          CT  TTTAATCTCCCCCC   --  AAC  AACACCCACGTATTTCTATCAAACATACCTCACGTATATACCACTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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