SE2851135

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10140
  • Sorghum bicolor
  • SE2851135
  • PIF/harbinger
  • To45
  • chromosome_3:61885516-61886006
  • TAG
  • TAGAGTGTGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
   A         -AT   CCTCCAAACCTAGCTTTTTGCTTGAATGAGTCAGGTTTGGGGTGTTTGGTTGTCTGGCCAGCCCCTGGAGCCAAGCTCCATCTGGCCTGCTATACAGTCAGGGCTAGGCCCAAGTAGAAACACCAGGTTGGTGTTTCTTCTGGAGCTAGGCTCCGGCTGGCTCCGTGATTCATTCCCGTCACCTCCTGGTCTTTACTCCCGTTCTCTTTCGCTACTAGTCCTCTTCA
TAG GTGTGTTTG   TGG                                                                                                                                                                                                                                   
||| |||||||||   |||                                                                                                                                                                                                                                    
ATC CACACAAAC   GCA                                                                                                                                                                                                                                   
   C         CAA   AAAGATATGTCAGACCGATCGTTTTGATTGGGTCGGATCCAACTCGGACAAGATTGATCCGGTTAAGCATCAACAAACCAACATACGTAACATGATCGGATCGACCGTAACCCACACAAACCAACAGATAGAACAAAACATGTCTTAATGGAGAAGAGAGAAGACCATTCCAATGGCCGAGAGTGTATAAAATAGCTTGTGGTGGTGTGGACTGATCAGTTATGGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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