SE2831136

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10141
  • Sorghum bicolor
  • SE2831136
  • hAT
  • Hat12
  • chromosome_3:57857214-57857777
  • AGAACAAT
  • TTAAGCCTGGGCAAATTACCCGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AGAACAA             ----AA         ACC         ---------  CCCAAATTACC --  ACCCGGACCCGAATTACCCAAACCCGCGGTACCCGATCCTAAATTCGGATAGCAATTTTGATTACCCGAAATTAGTTTGGGTAATTCGGGTAGTATCCCCCGGTACCCGAACTACCCGAATTACCCAAATATTTGTCTATATCTTTGTATTTATCATTTGTTATTAGTTAAATATTAGAACTTATCAATTTATTAGAACATAAATCTCTTTGTTTGAACAAG
       TTAAGCCTGGGCA      TTACCCGAT   CATTACCCG         TA           C  GG                                                                                                                                                                                                                              
       |||||||||||||      |||||||||   |||||||||         ||           |  ||                                                                                                                                                                                                                              T
       AATTCGGACCCGT      AATGGGCTA   AAAAAGCCC         AG           C  AT                                                                                                                                                                                                                              
TAACAAG             AAGCCC         ---         AGCCCATCA  ----------- CC  TAAGTTTTAAGCCCATTACTTTTAACAATTGCTATAATCAGGGTTTTTTTGTGATGGGCGTTAAAGCCCATGGGCTATTAAGCCCAAGCCCATAAGGGCTAAATGGGCTTTAAAGTTTTTTGTTGTGTGATATGTTTTAAAGTTATCGTTAAATATATATTAAAATCGTCGTTTAACATATCTTAAAGTTATCTTAAAACATCTCTTATTATATAATGATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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