SE2831139

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10144
  • Sorghum bicolor
  • SE2831139
  • hAT
  • Hat17
  • super_25:471562-472244
  • CATGCACC
  • TGCACCTAAGGATGAAAACGGAACGGAAATATCCCGAACCGAAC

Secondary structure and sequence

TSD    TIR
5'



3'
CA    CC               AA        TCC    CC        C    - TCT    T   TC      -   TCGTATTTTCTTGTTCGACTTTACCGTTTTCGTTTTCGTATTTTAGATGTTTCGTATTTTAAATGTAAAAGTAGAAAACGGTTTAGACATTTTTCGACCGTTTTCTACTTTTCTACTTTTAATTTGAAATATTTCGAATTCAAAATGGTTTAAACCGAATTTAGTCAACTGCACGGTCACACAGCCCAATTACAGAGTACTCACCATGCATCTGTGTTCTTTCTACTAGTGGCTAGCTATGTTCCTGTTAGCTATTAATTACTTGTTC
  TGCA  TAAGGATGAAAACGG  CGGAAATA   CGAA  GAACCGAA CGTT T   ATAT GGA  CGATCG AAT                                                                                                                                                                                                                                                                            
  ||||  |||||||||||||||  ||||||||   ||||  |||||||| |||| |   |||| |||  |||||| |||                                                                                                                                                                                                                                                                             
  ACGT  ATTCCTACTTTTGCC  GCCTTTGT   GCTT  TTTGAGGA TTTA C   AAAA GAT  GAAAAT TAA                                                                                                                                                                                                                                                                            
CC    AC               -A        -CA    --        -    A ---    -   --      G   ACTTTATGCTTTTGCTTTTGCTTTTGCCATTTCAGCCTGTGCTTTTGCTTGCGCTTGACTGCTTTATAGTTCTTAAAACTTTTGCTTGGTTAAGCTCGCCTAAATACAGCTTGTGCCAGCTATATGCTTTTGAGTTATGCTTTATGGCTACGCATCATGATTCACGTATTGATTCATATATGTGCTAGTTCAAATTCACGTATATTATTAATTTTTCACGTACTAAGAACCAGAATCCATAAATTATGTTATCGGGTGTGTATTTATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End