SE2851140

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10145
  • Sorghum bicolor
  • SE2851140
  • PIF/harbinger
  • To105
  • chromosome_5:53489093-53489483
  • TTA
  • AGGGGGCGTTTGTGAGGGTGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                      -------    -   A  --- -   -- TTGCTCGCTAGGCCCAGGCCACGTTAGACCAGGTCCAAGTACTGCAACAGTCCATGTTTGTCTTGCTGCATGCAAACGGTCCGGTCCAGAGGAGATTGTGTTTGTGAACCATGTTAGAGCCGGGCCAAATACCAAATACAACTATCTTGC
  AGGGGGCGTTTGTGAGGGTGGC       CGTG GTC GC   C TGG  C                                                                                                                                                      
  ||||||||||||||||||||||       |||| ||| ||   | |||  |                                                                                                                                                       
  TCCCCCGCAAACACTCCCACCG       CCGA ACG CG   G CCG  G                                                                                                                                                      
AT                      AGTCGAC    G   -  AGA G   AC TTCACACGCACAAACACGTGAACCGGGTCGTGTGTCGGACCGGGGGGATGTCGGTTTTGTCGGGAGAGTCGGACCGAGATCTCTATGCGACCCCTACTCGCAACAAAACCTCGGTCCGAGGAGCGCCGCGTGTCATCCCCGTTCACCCCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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