Plant MITE

SE2811141

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10146
Sorghum bicolor
SE2811141
Tc1/Mariner
St13
chromosome_6:50495924-50496160
TA
TACTCAATCCATCTCAAATTATAAGACGTTTGACTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

     AA                                GACA    G                  -                 -   -   TT C  TT     GG     TTT   AAT
TACTC  TCCATCTCAAATTATAAGACGTTTGACTTTTT    CCAA TTTGACCATTCGTCTTAT TAAAAAATTTGTGCAAA ATA TCA  T TT  GTCGT  CTTGG   ATT   
|||||  ||||||||||||||||||||||||||||||||    |||| |||||||||||||||||| ||||||||||||||||| ||| |||  | ||  |||||  |||||   |||    
ATGAG  AGGTAGGGTTTAATATTCTGCAAACTGAAAAA    GGTT AAACTGGTGAGCAGAATA GTTTTTTAAATGCGTTT TAT AGT  A AA  CAGTA  GAACT   TGA   
     GG                                ATAG    G                  A                 G   C   TT -  TT     -A     TCT   AGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811141

TACTCAATCCATCTCAAATTATAAGACGTTTGACTTTTTGACACCAAGTTTGACCATTCGTCTTATTAAAAAATTTGTGCAAAATATCATTTCTTTTGTCGTGGCTTGGTTTATTAATAGAAGTTCTTCAAGAATGACTTAAATTTGACTATGTTTGCGTAAATTTTTTGAATAAGACGAGTGGTCAAAGTTGGGATAAAAAAGTCAAACGTCTTATAATTTGGGATGGAGGGAGTA

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