SE2851142

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10147
  • Sorghum bicolor
  • SE2851142
  • PIF/harbinger
  • To2
  • chromosome_5:3529827-3530064
  • TTA
  • AGGCCTTGTTTAGTTTGCGAAAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                G           G       CTACTGTACTACTTTCGTTTGTATTTCAAAAATATTGTCCAATCATAGACTAACTAGGCTCAAAAGATTCATCTCGTAAAT
  AGGCCTTGTTTAGTTT CGAAAATTTTT CTTTTGG                                                                                 
  |||||||||||||||| ||||||||||| |||||||                                                                                 T
  TCCGGAACAAATCAAA GTTTTTAAAAG TTCTAAG                                                                                 
AT                G           -       GGGTAGTGTAGCTTAGAAATTTGCATACGTACTTTGTAATTTATATTTATTTTTATTTTTGATTAACGTGTCAAACGGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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