Plant MITE

SE2851144

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10149
Sorghum bicolor
SE2851144
PIF/harbinger
To14
chromosome_8:52308283-52308531
TAA
AGGCCTTGTTTAGTTTC

Secondary structure and sequence

TSD TIR

5'

3'

TA                 -AATTTT           ----A  AA    -  CATTTTCA        T    -------- ATATTGTCCGATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGCAAATTAC
  AGGCCTTGTTTAGTTTC       TTTTGCAAAAT     GG  TAGT AG        TTTGTATT GACA        A                                                     
  |||||||||||||||||       |||||||||||     ||  |||| ||        |||||||| ||||        |                                                      
  TCCGGAACAAATCAAGG       AAAACGTTTTA     TC  TAAG GG        AGTGTAGA TAGA        T                                                     
AA                 GTTTTAT           AAGAG  --    G  -------T        T    ACACCGTG ATGTACTTCATGATTTATATCTATTTTCTTTATTGATTAATGTGTCAGATGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851144

TAAGGCCTTGTTTAGTTTCAATTTTTTTTGCAAAATAGGAATAGTAGCATTTTCATTTGTATTTGACAAATATTGTCCGATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGCAAATTACAGGTAGACTGTGTAATTAGTTATTTCTTTTATCTATATTTAGTACTTCATGTATGTGCCACAAGATTAGATGTGATGGGGAATCTGAGAAATTTTGCAAAATATTTTGGGAACTAAACAAGGCCTAA

Copy Cancel