Plant MITE

SE2851145

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10150
Sorghum bicolor
SE2851145
PIF/harbinger
To106
chromosome_1:277584-278111
TTA
AGGGCCCCTTTGGATGACAGG

Secondary structure and sequence

TSD TIR

5'

3'

TT             A G     ---   --    ------   T  AGGAATAGGAAAACCTTAGGAATACATATGCCATACCCCTCCGTTCCTACGAAAATTCAAAACACAGGAAAGCTGAAATGAAGTCCTTTGGCAGTAGCACAGGTGAAACACAGGAATAAACCACAGAGACTAGATGCTTCCATTATTTTTTAAAATCTTGAACATCTACCAGTTATTCATTCAAAGTCACTCGCTTTGTTGTTTGCCTCTGGAATGACCCAGG
  AGGGCCCCTTTGG T ACAGG   ATA  GGAA      ATA GT                                                                                                                                                                                                                               
  ||||||||||||| | |||||   |||  ||||      ||| ||                                                                                                                                                                                                                                
  TCCCGGGGAAACC A TGTCC   CCG  TCCT      ATC CT                                                                                                                                                                                                                               
AT             A G     CAC   TT    AAAAAC   -  AATCGAAAGGATTCCTTATAAAGGAAAGGATCGGAAACCAACTATACTTTTTGTTTCCTTCAAAAGGTATCCTAATCTTAGGATACTGAGATAAGGTATCCTTTGTTTTGTAATCGAGTCTGGAGTACCTTAAAAAGGACCGCCCTTTGTTTCACACACGGGCGCGAGACACGTACAAGAAAAAAAAACCAACCGTCGAAGACCACTCGGAATGCACCCGACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851145

TTAGGGCCCCTTTGGATGACAGGATAGGAAATATGTAGGAATAGGAAAACCTTAGGAATACATATGCCATACCCCTCCGTTCCTACGAAAATTCAAAACACAGGAAAGCTGAAATGAAGTCCTTTGGCAGTAGCACAGGTGAAACACAGGAATAAACCACAGAGACTAGATGCTTCCATTATTTTTTAAAATCTTGAACATCTACCAGTTATTCATTCAAAGTCACTCGCTTTGTTGTTTGCCTCTGGAATGACCCAGGCCAGCCCACGTAAGGCTCACCAGAAGCTGCCAACCAAAAAAAAAGAACATGCACAGAGCGCGGGCACACACTTTGTTTCCCGCCAGGAAAAATTCCATGAGGTCTGAGCTAATGTTTTGTTTCCTATGGAATAGAGTCATAGGATTCTAATCCTATGGAAAACTTCCTTTGTTTTTCATATCAACCAAAGGCTAGGAAAGGAAATATTCCTTAGGAAAGCTAATCCTACAAAAATCCTTTGCCCACCCTGTGAACCAAAGGGGCCCTTA

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