SE2851150

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10155
  • Sorghum bicolor
  • SE2851150
  • PIF/harbinger
  • To4
  • chromosome_1:2642215-2642463
  • TTG
  • GGGCCTTGTTTAGTTCCAAAGTTTTTTGAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 -    TT     -      ---    A --        TTTCATTTGTATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGCAAATTA
  GGGCCTTGTTTAGTTCC AAAG  TTTTG AAAAAT   GAGC T  TGTAGTAC                                                                       
  ||||||||||||||||| ||||  ||||| ||||||   |||| |  ||||||||                                                                       C
  TCCGGAACAAATCAAGG TTTC  AAAAC TTTTTA   AGTG T  AAAGTAGT                                                                       
GT                 A    TT     G      AAA    - AA        GTAGCTTAGAACGCCGTGTACGTACTTGTAATTTATATCTATTTTCTTTATTGATTAATGTGTCAAATAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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