SE2851151

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10156
  • Sorghum bicolor
  • SE2851151
  • PIF/harbinger
  • To2
  • chromosome_10:2880907-2881380
  • TAA
  • AGGCCTTGTTTAGTTCGCAAAAATTTTTCAAGATTTCCCGTCACATCGAATCTTTGGTCGCATGCATGAAGCATTAAATATAGACAAAAATAAAAACTAATTACACAGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA                G          T      --------   - C                  T  C       A  C            CA                 C       ACCTGTAAT   -                          C                   TT         A        -      AGTA   AAAAA    -- ATTTTTAGGAACTAAGGCCTTG
  AGGCCTTGTTTAGTTC CAAAAATTTT CAAGAT        TTC C GTCACATCGAATCTTTGG CG ATGCATG AG ATTAAATATAGA  AAAATAAAAACTAATTA ACAGTTT         TTG TGAGATGAATCTTTTGAGCCTAGTTA TCTGTGATTGGGCAATGTT  TGTCAAATA AAACGAAA TGCTAT    GCC     CTAA  A                      
  |||||||||||||||| |||||||||| ||||||        ||| | |||||||||||||||||| || ||||||| || ||||||||||||  ||||||||||||||||| |||||||         ||| |||||||||||||||||||||||||| |||||||||||||||||||  ||||||||| |||||||| ||||||    |||     ||||  |                      T
  TCCGGAACAAATCAAG GTTTTTAAAA GTTTTG        AAG G CAGTGTAGCTTAGAAATC GC TACGTAC TC TAATTTATATCT  TTTTATTTTTGATTAAT TGTCAAA         AAC GCTCTGCTTAGAAAACTTGGATCAAT AGATATTAATCTGTTATAA  ATAGTTTAT TTTGCTTT ATGATG    ATA     AGTG  A                      
AA                G          C      AAAAGTTT   A A                  T  A       C  A            AC                 A       -CCAGTCTT   T                          C                   --         G        T      ----   -----    CA AACGTTTTTTAAAACTTTCATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End