Plant MITE

SE2851152

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10157
Sorghum bicolor
SE2851152
PIF/harbinger
To22
chromosome_8:10147541-10147790
TTA
AGAGCAAGTATTATAATA

Secondary structure and sequence

TSD TIR

5'

3'

TT                  -   -      -------     TAAATGCTGAGGTGGAGGAGAGAGAAGAGGAGAGAGAGTAAAAACGGGCTATAAGCTTACAGCCGGGCTCAGACACAAAAATCAAA
  AGAGCAAGTATTATAATA GGC TGTAAG       CCAGC                                                                                      
  |||||||||||||||||| ||| ||||||       |||||                                                                                      A
  TCTCGTTCATAATATTAT TCG TCGACG       TTCCG                                                                                      
AT                  G   G      ACCAACA     AAGAAATGTCGGAAGAACGTCGGGTGAATATATTACCAATCGAGTAGTGATAATTATGTACCGGGTGAACAGACAGAGTGTCTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851152

TTAGAGCAAGTATTATAATAGGCTGTAAGCCAGCTAAATGCTGAGGTGGAGGAGAGAGAAGAGGAGAGAGAGTAAAAACGGGCTATAAGCTTACAGCCGGGCTCAGACACAAAAATCAAAAAAGTCTGTGAGACAGACAAGTGGGCCATGTATTAATAGTGATGAGCTAACCATTATATAAGTGGGCTGCAAGAAGGCTGTAAAGAAGCCTTACAACCAGCAGCTGGCTGTATTATAATACTTGCTCTTA

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