SE2851154

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10159
  • Sorghum bicolor
  • SE2851154
  • PIF/harbinger
  • To2
  • chromosome_6:40485882-40486129
  • TAA
  • AGGCCTTGTTTAGTTCCAAAATATTTTGTAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                     T            CGACAC  T    CTTTC       --  T  --------  - ATATTGTCTAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTC
  AGGCCTTGTTTAGTTCCAAAA ATTTTGTAAAAT      TG AGCT     GTTTGTA  TT GA        CA A                                                     
  ||||||||||||||||||||| ||||||||||||      || ||||     |||||||  || ||        || |                                                     G
  TCCGGAACAAATCAAGGTTTT TAAAACGTTTTA      TC TAAG     GAGCAGT  AG CT        TG G                                                     
AA                     T            -AAAAG  -    -----       GT  -  TAGAAATC  T TACGTACTTCATAATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAACCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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