Plant MITE

SE2851156

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10161
Sorghum bicolor
SE2851156
PIF/harbinger
To2
chromosome_1:17943938-17944186
CAG
GGGCCTTGTTTAGTTCCAAAATTTTTGGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

CA              --       T     G      -----    A   TAGCAATTTC      ATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCCGACCA
  GGGCCTTGTTTAGT  TCCAAAA TTTTG CAAAAT     GAGC CTG          GTTTGT                                                                   
  ||||||||||||||  ||||||| ||||| ||||||     |||| |||          ||||||                                                                    
  CCCGGAACAAATCA  AGGTTTT AAAAC GTTTTA     TCTA AGG          GGCAGT                                                                   
GA              AG       T     -      AAAAG    -   ----------      GTAGCTTAGAAATCTGCATACGTACTTCATAATTTATATCTATTTTTATTTTTGATTAACGTGTCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851156

CAGGGCCTTGTTTAGTTCCAAAATTTTTGGCAAAATGAGCACTGTAGCAATTTCGTTTGTATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCCGACCAAACTGTGCAATTAGTTTTTATTTTTATCTATATTTAATACTTCATGCATACGTCTAAAGATTCGATGTGACGGGGAATCTGAAAAATTTTGCAAAATTTTTGGAGAACTAAACAAGGCCCAG

Copy Cancel