SE2851158

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10163
  • Sorghum bicolor
  • SE2851158
  • PIF/harbinger
  • To13
  • chromosome_3:615607-615888
  • TAA
  • AGAGCATCTCCAAGAGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      T      G     -  ---   -----     -  TAGCCAAATTTTAATGTTTAGCCATTTTGTAAAATAGATAACTTCTTAAAAAAGAAGAGATTTACAACAGCTTTGCTATCAGATAGCTAGTGCCAGTGGTTGG
  AGAGCA CTCCAA AGCTT GG   CTA     AAATT AG                                                                                                       
  |||||| |||||| ||||| ||   |||     ||||| ||                                                                                                        
  TCTCGT GAGGTT TCGAA CG   AGA     ACCTC GG                                                                                                       
AA      T      G     A  ATA   ATAAT     C  AAAATCTTGAAGATATCATCTTTTTATCCGAGGTTGTCTACACGATAAACCAAAACGTTTTATCTTTTAAACGATAGGGAACTAAAAGCAACCGGTATATATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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