SE2851160

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10165
  • Sorghum bicolor
  • SE2851160
  • PIF/harbinger
  • To1
  • chromosome_3:51995651-51995888
  • TTA
  • AGGCCTTGTTCAGTTTGCGAAAATTTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT          C     G             TTTT     CT --- A    TTTC -      -    ACAATTATTATCCAATTATGGAGTAACTAGGCTCAAAAAATTCGTCTCGCAAATTA
  AGGCCTTGTT AGTTT CGAAAATTTTTGG    GACTA  G   T GCAC    G TTTGTT TGTG                                                        
  |||||||||| ||||| |||||||||||||    |||||  |   | ||||    | |||||| ||||                                                        C
  TCCGGAACAA TCAAG GTTTTTAAAAATT    TAAAG  G   G TGTA    G TTAGAA TATG                                                        
AT          A     G             ---C     -- GCA -    ---- C      A    TGTACGTACTTCGTAATTTACATCTACTTTTATTTTTGATTAACGTGTCAAACAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3