Plant MITE

SE2851163

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10168
Sorghum bicolor
SE2851163
PIF/harbinger
To8
chromosome_7:51479587-51479783
TAA
AGGGCCTGTTTGGATCCTCCTCTCTATATTTTAGACTTTTAAAAACTTTAGAGC

Secondary structure and sequence

TSD TIR

5'

3'

TA     C            CC   -   T        -    TAA            ACTTTAG    TTTTTGAGGTCTAAAGCTCTAATGTGAGGTGAGCTA
  AGGGC TGTTTGGATCCT  TCT CTA ATTTTAGA CTTT   AAACTTTAGAGC       CTCA                                    
  ||||| ||||||||||||  ||| ||| |||||||| ||||   ||||||||||||       ||||                                     
  TCCCG ACAAATCTAGGG  AGA GAT TGAAATCT GAGA   TTTGAAATCTCG       ATTT                                    
AA     A            -A   A   T        C    ---            -------    CGAGATTTGTCCACCAGATTTTAATCGAGATTTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851163

TAAGGGCCTGTTTGGATCCTCCTCTCTATATTTTAGACTTTTAAAAACTTTAGAGCACTTTAGCTCATTTTTGAGGTCTAAAGCTCTAATGTGAGGTGAGCTAAAGTTTAGAGCTAATTTTAGACCACCTGTTTAGAGCTTTAGCTCTAAAGTTTAGAGCTCTAAAGTTTAGAAGAAGGGATCTAAACAAGCCCTAA

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