SE2851164

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10169
  • Sorghum bicolor
  • SE2851164
  • PIF/harbinger
  • To4
  • chromosome_1:18885726-18885963
  • TAA
  • AGGCCTTGTTTAGTTCGCAAAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                       A    GTTTTTG    CTGTAGCATTTCGTTTTTTTTTTGACAAACATTGTCCAATCACGGAGTAACTAGGCTCAAAAGATTCATCTCACAAATTAC
  AGGCCTTGTTTAGTTCGCAAAAA TTTT       GCTA                                                                                 
  ||||||||||||||||||||||| ||||       ||||                                                                                 A
  TCCGGAACAAATCAAGCGTTTTT AAAG       TTCT                                                                                 
AA                       A    -------    AAGGGGCAGTGTAGCTTAGAAACCAGTATACGTACCTCGTAATTTATATCTGCTTTTATTTTTGATTGATGTGTCAAATGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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