Plant MITE

SE2851165

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10170
Sorghum bicolor
SE2851165
PIF/harbinger
To78
chromosome_2:77575232-77575507
TTA
AGGGCCTGTTTAGATGC

Secondary structure and sequence

TSD TIR

5'

3'

TT               G ---AGCCAA   -G          TGGAGAA      A    -------  -   AGAATGGATCTAAACAGGGGGCTTGTAAAACTTGGCTGTAAAGATTTGGAATTTGGGACCTTGGAGCCCAAAAA
  AGGGCCTGTTTAGAT C         ACA  CCAAAACTTT       ATGAGC CTTT       TT GGA                                                                          
  ||||||||||||||| |         |||  ||||||||||       |||||| ||||       || |||                                                                           
  TCCCGGACAAATCTA G         TGT  GGTTTTGAAA       ACCGAC ATTT       AA TTT                                                                          
AT               G GTTTAGAAA   AG          -------      -    GAAATAT  G   ATCCACAAATCTACGAAGGGTTTAAAAAACCAGTTGTTCTGTGTACTGTGCCCAGGGATTCGTTCAAATGTGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851165

TTAGGGCCTGTTTAGATGCAGCCAAACAGCCAAAACTTTTGGAGAAATGAGCACTTTTTGGAAGAATGGATCTAAACAGGGGGCTTGTAAAACTTGGCTGTAAAGATTTGGAATTTGGGACCTTGGAGCCCAAAAACTGTGTAAACTTGCTTAGGGACCCGTGTCATGTGTCTTGTTGACCAAAAAATTTGGGAAGCATCTAAACACCTATTTGAATATAAAGTTTACAGCCAAAAGTTTTGGGATGTAAAGATTTGGGATCTAAACAGGCCCTTA

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