SE2851168

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10173
  • Sorghum bicolor
  • SE2851168
  • PIF/harbinger
  • To2
  • chromosome_6:2387192-2387439
  • TGA
  • AGGCCTTGTTTAGTTCCCAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TG                 C   AA     -      TTTTC    -  -C   ----  --- CA -   ATCT    ACGTATGCATGGAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTTA
  AGGCCTTGTTTAGTTCC AAA  TTTTG CAAAAT     AGAT TC  CCG    TC   A  T CGA    TTAG                                                       
  ||||||||||||||||| |||  ||||| ||||||     |||| ||  |||    ||   |  | |||    ||||                                                       G
  TCCGGAACAAATCAAGG TTT  AAAAC GTTTTA     TTCG GA  TCG    AG   A  C TAA    TGTT                                                       
AG                 -   AA     C      -----    T  CA   TTAA  CAA -- A   --AC    TATAACAAGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAGGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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